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Oh man, another one.  After beating it, go to The Tower and select ship from the menu.  If the spikes get you while the teleportation flashing and popping are still going, he dies, but then you can't control him when it restarts you at the last checkpoint

Hit a nasty bug.  Playing with it full screen I alt+tabbed out, and then when I went back, I couldn't unpause it.  Further experimenting with that revealed that it's actually just that it never updates the graphics.  From the sounds, I could still play it, but I just wouldn't see it.

Sounds like a Flash projector problem, though.  Not sure if you can actually do anything about it.

Doesn't happen in windowed.  And windowed+maximized looks nicer anyway.